[BlueOnyx:19252] Yum update broke my PHP and SSL

Simone Capra capra at erweb.it
Wed Mar 2 04:07:09 -05 2016 

Hi all,
this morning i have made a yum update on a 5208 server.

After the update all sites have lost the ability to serve PHP pages. 
Instead of the php output i have found the php source.
I looked at the vhost site's definition under /etc/httpd/vhosts/<siteid> 
and the webscripting section is empty
# BEGIN WebScripting SECTION.  DO NOT EDIT MARKS OR IN BETWEEN.
# END WebScripting SECTION.  DO NOT EDIT MARKS OR IN BETWEEN.
# BEGIN PHP SECTION.  DO NOT EDIT MARKS OR IN BETWEEN.
# END PHP SECTION.  DO NOT EDIT MARKS OR IN BETWEEN.

Then i when in the admin interface and i've found that all the PHP 
settings are disabled...

The update broke also SSL: a vsite with a self signed certificate is not 
working anymore.

Any idea? The following is the yum.log with the updated packages:

Mar 02 08:18:46 Installed: python-devel-2.6.6-64.el6.x86_64
Mar 02 08:18:47 Installed: 1:perl-Error-0.17015-4.el6.noarch
Mar 02 08:18:47 Installed: python-virtualenv-1.10.1-1.el6.noarch
Mar 02 08:18:47 Updated: base-alpine-locale-de_DE-1.2-1BX57.el6.noarch
Mar 02 08:18:48 Updated: base-ssl-locale-fr_FR-1.3.0-0BX15.el6.noarch
Mar 02 08:18:48 Updated: base-disk-locale-ja_JP-3.0.0-1BX13.el6.noarch
Mar 02 08:18:48 Updated: base-wizard-locale-fr_FR-2.0.0-0BX20.el6.noarch
Mar 02 08:18:49 Updated: base-support-locale-fr_FR-1.0.0-0BX14.el6.noarch
Mar 02 08:18:49 Updated: base-alpine-locale-it_IT-1.2-1BX57.el6.noarch
Mar 02 08:18:49 Updated: base-support-locale-nl_NL-1.0.0-0BX14.el6.noarch
Mar 02 08:18:50 Updated: base-alpine-locale-en_US-1.2-1BX57.el6.noarch
Mar 02 08:18:50 Updated: base-wizard-locale-en_US-2.0.0-0BX20.el6.noarch
Mar 02 08:18:50 Updated: base-am-locale-en_US-2.0.0-0BX08.el6.noarch
Mar 02 08:18:51 Installed: libffi-devel-3.0.5-3.2.el6.x86_64
Mar 02 08:18:51 Updated: base-vsite-locale-da_DK-4.0-0BX36.el6.noarch
Mar 02 08:18:53 Updated: selinux-policy-3.7.19-279.el6_7.8.noarch
Mar 02 08:18:53 Updated: base-ssl-locale-it_IT-1.3.0-0BX15.el6.noarch
Mar 02 08:18:54 Updated: base-user-locale-it_IT-2.0.0-0BX15.el6.noarch
Mar 02 08:18:54 Updated: base-support-locale-it_IT-1.0.0-0BX14.el6.noarch
Mar 02 08:18:54 Updated: base-swupdate-locale-it_IT-1.6.1-0BX02.el6.noarch
Mar 02 08:18:55 Updated: base-am-ui-2.0.0-0BX08.el6.noarch
Mar 02 08:18:57 Updated: base-am-glue-2.0.0-0BX08.el6.noarch
Mar 02 08:18:57 Updated: base-user-locale-da_DK-2.0.0-0BX15.el6.noarch
Mar 02 08:18:58 Updated: base-user-locale-fr_FR-2.0.0-0BX15.el6.noarch
Mar 02 08:18:58 Updated: base-support-locale-en_US-1.0.0-0BX14.el6.noarch
Mar 02 08:18:58 Updated: base-sitestats-locale-en_US-2.0-0BX13.el6.noarch
Mar 02 08:18:59 Updated: base-email-locale-ja_JP-1.6.0-0BX37.el6.noarch
Mar 02 08:18:59 Updated: base-alpine-locale-nl_NL-1.2-1BX57.el6.noarch
Mar 02 08:18:59 Updated: base-sitestats-locale-da_DK-2.0-0BX13.el6.noarch
Mar 02 08:18:59 Updated: base-am-locale-es_ES-2.0.0-0BX08.el6.noarch
Mar 02 08:19:40 Updated: base-vsite-glue-4.0-0BX36.el6.noarch
Mar 02 08:19:40 Updated: base-disk-ui-3.0.0-1BX13.el6.noarch
Mar 02 08:19:40 Updated: base-sitestats-locale-it_IT-2.0-0BX13.el6.noarch
Mar 02 08:19:41 Updated: base-disk-locale-pt_PT-3.0.0-1BX13.el6.noarch
Mar 02 08:19:41 Updated: base-swupdate-locale-fr_FR-1.6.1-0BX02.el6.noarch
Mar 02 08:19:42 Updated: base-user-locale-pt_PT-2.0.0-0BX15.el6.noarch
Mar 02 08:19:42 Updated: base-am-locale-nl_NL-2.0.0-0BX08.el6.noarch
Mar 02 08:19:42 Updated: base-ssl-locale-ja_JP-1.3.0-0BX15.el6.noarch
Mar 02 08:19:42 Updated: base-vsite-locale-fr_FR-4.0-0BX36.el6.noarch
Mar 02 08:19:43 Updated: base-user-locale-en_US-2.0.0-0BX15.el6.noarch
Mar 02 08:19:43 Updated: base-am-locale-it_IT-2.0.0-0BX08.el6.noarch
Mar 02 08:19:43 Updated: base-disk-locale-en_US-3.0.0-1BX13.el6.noarch
Mar 02 08:19:44 Updated: base-email-locale-de_DE-1.6.0-0BX37.el6.noarch
Mar 02 08:19:44 Updated: base-vsite-locale-ja_JP-4.0-0BX36.el6.noarch
Mar 02 08:19:44 Updated: base-user-ui-2.0.0-0BX15.el6.noarch
Mar 02 08:19:45 Updated: base-sitestats-locale-fr_FR-2.0-0BX13.el6.noarch
Mar 02 08:19:45 Updated: base-vsite-locale-it_IT-4.0-0BX36.el6.noarch
Mar 02 08:19:45 Updated: base-am-locale-pt_PT-2.0.0-0BX08.el6.noarch
Mar 02 08:19:46 Updated: base-alpine-locale-pt_PT-1.2-1BX57.el6.noarch
Mar 02 08:19:46 Updated: base-apache-ui-2.0.0-0BX19.el6.noarch
Mar 02 08:19:46 Updated: base-email-ui-1.6.0-0BX37.el6.noarch
Mar 02 08:19:47 Updated: base-alpine-glue-1.2-1BX57.el6.noarch
Mar 02 08:19:47 Updated: 1:autocorr-en-4.2.8.2-11.el6_7.1.noarch
Mar 02 08:19:48 Updated: base-vsite-locale-pt_PT-4.0-0BX36.el6.noarch
Mar 02 08:19:48 Updated: base-support-ui-1.0.0-0BX14.el6.noarch
Mar 02 08:19:48 Updated: base-support-locale-ja_JP-1.0.0-0BX14.el6.noarch
Mar 02 08:19:48 Updated: base-apache-locale-es_ES-2.0.0-0BX19.el6.noarch
Mar 02 08:20:25 Updated: base-user-glue-2.0.0-0BX15.el6.noarch
Mar 02 08:20:25 Updated: base-disk-locale-nl_NL-3.0.0-1BX13.el6.noarch
Mar 02 08:20:25 Updated: base-apache-locale-nl_NL-2.0.0-0BX19.el6.noarch
Mar 02 08:20:26 Updated: base-email-locale-fr_FR-1.6.0-0BX37.el6.noarch
Mar 02 08:20:26 Updated: base-disk-locale-de_DE-3.0.0-1BX13.el6.noarch
Mar 02 08:20:26 Updated: base-disk-locale-da_DK-3.0.0-1BX13.el6.noarch
Mar 02 08:20:27 Updated: base-swupdate-locale-pt_PT-1.6.1-0BX02.el6.noarch
Mar 02 08:20:27 Updated: base-vsite-locale-es_ES-4.0-0BX36.el6.noarch
Mar 02 08:20:27 Updated: base-email-locale-es_ES-1.6.0-0BX37.el6.noarch
Mar 02 08:20:28 Updated: base-apache-locale-ja_JP-2.0.0-0BX19.el6.noarch
Mar 02 08:20:29 Updated: base-sitestats-ui-2.0-0BX13.el6.noarch
Mar 02 08:20:29 Updated: base-apache-locale-it_IT-2.0.0-0BX19.el6.noarch
Mar 02 08:20:29 Updated: base-apache-locale-fr_FR-2.0.0-0BX19.el6.noarch
Mar 02 08:20:29 Updated: base-ssl-locale-en_US-1.3.0-0BX15.el6.noarch
Mar 02 08:20:30 Updated: base-ssl-locale-es_ES-1.3.0-0BX15.el6.noarch
Mar 02 08:20:30 Updated: base-am-locale-fr_FR-2.0.0-0BX08.el6.noarch
Mar 02 08:20:31 Updated: base-user-locale-nl_NL-2.0.0-0BX15.el6.noarch
Mar 02 08:20:31 Updated: base-swupdate-ui-1.6.1-0BX02.el6.noarch
Mar 02 08:20:31 Updated: base-apache-locale-da_DK-2.0.0-0BX19.el6.noarch
Mar 02 08:20:32 Updated: base-email-locale-it_IT-1.6.0-0BX37.el6.noarch
Mar 02 08:20:34 Updated: 
1:libreoffice-opensymbol-fonts-4.2.8.2-11.el6_7.1.noarch
Mar 02 08:20:35 Updated: base-wizard-ui-2.0.0-0BX20.el6.noarch
Mar 02 08:20:35 Updated: base-swupdate-locale-es_ES-1.6.1-0BX02.el6.noarch
Mar 02 08:20:36 Updated: base-swupdate-glue-1.6.1-0BX02.el6.noarch
Mar 02 08:20:36 Updated: base-email-locale-en_US-1.6.0-0BX37.el6.noarch
Mar 02 08:20:37 Updated: base-swupdate-locale-de_DE-1.6.1-0BX02.el6.noarch
Mar 02 08:21:19 Updated: base-email-glue-1.6.0-0BX37.el6.noarch
Mar 02 08:21:19 Updated: base-alpine-locale-da_DK-1.2-1BX57.el6.noarch
Mar 02 08:21:20 Updated: base-vsite-ui-4.0-0BX36.el6.noarch
Mar 02 08:21:20 Updated: base-support-locale-pt_PT-1.0.0-0BX14.el6.noarch
Mar 02 08:21:22 Updated: base-sitestats-glue-2.0-0BX13.el6.noarch
Mar 02 08:21:22 Updated: base-user-locale-es_ES-2.0.0-0BX15.el6.noarch
Mar 02 08:21:22 Updated: base-swupdate-locale-da_DK-1.6.1-0BX02.el6.noarch
Mar 02 08:21:23 Updated: base-wizard-locale-de_DE-2.0.0-0BX20.el6.noarch
Mar 02 08:21:23 Updated: base-wizard-locale-es_ES-2.0.0-0BX20.el6.noarch
Mar 02 08:21:23 Updated: base-email-locale-nl_NL-1.6.0-0BX37.el6.noarch
Mar 02 08:21:23 Updated: base-am-locale-ja_JP-2.0.0-0BX08.el6.noarch
Mar 02 08:21:24 Updated: base-alpine-locale-es_ES-1.2-1BX57.el6.noarch
Mar 02 08:21:24 Updated: base-disk-glue-3.0.0-1BX13.el6.noarch
Mar 02 08:21:25 Updated: base-am-locale-de_DE-2.0.0-0BX08.el6.noarch
Mar 02 08:21:25 Updated: base-swupdate-locale-en_US-1.6.1-0BX02.el6.noarch
Mar 02 08:21:25 Updated: base-support-locale-de_DE-1.0.0-0BX14.el6.noarch
Mar 02 08:21:25 Updated: base-sitestats-locale-ja_JP-2.0-0BX13.el6.noarch
Mar 02 08:21:26 Updated: base-ssl-ui-1.3.0-0BX15.el6.noarch
Mar 02 08:21:28 Updated: tzdata-2016a-2.el6.noarch
Mar 02 08:21:35 Updated: glibc-2.12-1.166.el6_7.7.x86_64
Mar 02 08:21:48 Updated: glibc-common-2.12-1.166.el6_7.7.x86_64
Mar 02 08:21:52 Updated: libxml2-2.7.6-20.el6_7.1.x86_64
Mar 02 08:21:53 Updated: openssl-1.0.1e-42.el6_7.4.x86_64
Mar 02 08:21:54 Updated: 32:bind-libs-9.8.2-0.37.rc1.el6_7.6.x86_64
Mar 02 08:21:59 Installed: python27-libs-2.7.10-1.el6.x86_64
Mar 02 08:21:59 Installed: python27-2.7.10-1.el6.x86_64
Mar 02 08:22:00 Installed: python27-setuptools-18.5-1.el6.noarch
Mar 02 08:22:00 Installed: python27-devel-2.7.10-1.el6.x86_64
Mar 02 08:22:03 Installed: git-1.7.1-3.el6_4.1.x86_64
Mar 02 08:22:04 Installed: perl-Git-1.7.1-3.el6_4.1.noarch
Mar 02 08:22:05 Installed: 1:tk-8.5.7-5.el6.x86_64
Mar 02 08:22:06 Updated: 2:libpng-1.2.49-2.el6_7.x86_64
Mar 02 08:22:07 Installed: 1:tix-8.4.3-5.el6.x86_64
Mar 02 08:22:07 Installed: tkinter27-2.7.10-1.el6.x86_64
Mar 02 08:22:08 Installed: python27-tools-2.7.10-1.el6.x86_64
Mar 02 08:22:09 Installed: python27-virtualenv-13.1.2-1.el6.noarch
Mar 02 08:22:10 Installed: python27-pip-7.1.2-1.el6.noarch
Mar 02 08:22:12 Updated: 32:bind-9.8.2-0.37.rc1.el6_7.6.x86_64
Mar 02 08:22:13 Updated: ntpdate-4.2.6p5-5.el6_7.4.x86_64
Mar 02 08:22:14 Updated: libxml2-python-2.7.6-20.el6_7.1.x86_64
Mar 02 08:22:19 Updated: sos-3.2-28.el6_7.2.noarch
Mar 02 08:22:20 Installed: augeas-libs-1.0.0-10.el6.x86_64
Mar 02 08:22:23 Installed: blueonyx-letsencrypt-0.1.0-4.noarch
Mar 02 08:22:24 Updated: sausalito-cce-client-0.99.2-1BX03.el6.x86_64
Mar 02 08:23:00 Updated: sausalito-cce-server-0.99.2-1BX03.el6.x86_64
Mar 02 08:23:01 Updated: nss-sysinit-3.19.1-8.el6_7.x86_64
Mar 02 08:23:02 Updated: nss-3.19.1-8.el6_7.x86_64
Mar 02 08:23:03 Updated: base-ssl-locale-de_DE-1.3.0-0BX15.el6.noarch
Mar 02 08:24:33 Updated: base-apache-glue-2.0.0-0BX19.el6.noarch
Mar 02 08:24:33 Updated: base-ssl-locale-pt_PT-1.3.0-0BX15.el6.noarch
Mar 02 08:24:33 Updated: base-sitestats-locale-de_DE-2.0-0BX13.el6.noarch
Mar 02 08:24:34 Updated: base-am-locale-da_DK-2.0.0-0BX08.el6.noarch
Mar 02 08:24:34 Updated: base-user-locale-de_DE-2.0.0-0BX15.el6.noarch
Mar 02 08:24:34 Updated: base-sitestats-locale-nl_NL-2.0-0BX13.el6.noarch
Mar 02 08:24:41 Updated: base-alpine-ui-1.2-1BX57.el6.noarch
Mar 02 08:24:42 Updated: base-disk-locale-it_IT-3.0.0-1BX13.el6.noarch
Mar 02 08:24:42 Updated: base-email-locale-da_DK-1.6.0-0BX37.el6.noarch
Mar 02 08:24:43 Updated: base-sitestats-locale-pt_PT-2.0-0BX13.el6.noarch
Mar 02 08:24:43 Updated: base-wizard-locale-ja_JP-2.0.0-0BX20.el6.noarch
Mar 02 08:24:44 Updated: tzdata-java-2016a-2.el6.noarch
Mar 02 08:24:54 Updated: 
1:java-1.6.0-openjdk-1.6.0.38-1.13.10.0.el6_7.x86_64
Mar 02 08:24:55 Updated: 1:libreoffice-ure-4.2.8.2-11.el6_7.1.x86_64
Mar 02 08:25:24 Updated: 1:libreoffice-core-4.2.8.2-11.el6_7.1.x86_64
Mar 02 08:25:24 Updated: base-support-glue-1.0.0-0BX14.el6.noarch
Mar 02 08:25:25 Updated: base-email-locale-pt_PT-1.6.0-0BX37.el6.noarch
Mar 02 08:25:25 Updated: base-email-capstone-1.6.0-0BX37.el6.noarch
Mar 02 08:25:26 Updated: base-apache-locale-en_US-2.0.0-0BX19.el6.noarch
Mar 02 08:25:26 Updated: base-wizard-locale-nl_NL-2.0.0-0BX20.el6.noarch
Mar 02 08:25:28 Updated: kernel-headers-2.6.32-573.12.1.el6.x86_64
Mar 02 08:25:29 Updated: glibc-headers-2.12-1.166.el6_7.7.x86_64
Mar 02 08:25:30 Updated: base-disk-locale-es_ES-3.0.0-1BX13.el6.noarch
Mar 02 08:25:30 Updated: base-support-locale-es_ES-1.0.0-0BX14.el6.noarch
Mar 02 08:25:30 Updated: base-vsite-locale-en_US-4.0-0BX36.el6.noarch
Mar 02 08:25:31 Updated: base-apache-locale-pt_PT-2.0.0-0BX19.el6.noarch
Mar 02 08:25:31 Updated: base-support-locale-da_DK-1.0.0-0BX14.el6.noarch
Mar 02 08:25:32 Updated: base-support-capstone-1.0.0-0BX14.el6.noarch
Mar 02 08:25:34 Updated: base-ssl-glue-1.3.0-0BX15.el6.noarch
Mar 02 08:25:34 Updated: base-wizard-locale-it_IT-2.0.0-0BX20.el6.noarch
Mar 02 08:25:35 Updated: base-vsite-locale-de_DE-4.0-0BX36.el6.noarch
Mar 02 08:25:35 Updated: base-swupdate-locale-ja_JP-1.6.1-0BX02.el6.noarch
Mar 02 08:25:35 Updated: base-sitestats-locale-es_ES-2.0-0BX13.el6.noarch
Mar 02 08:25:36 Updated: base-swupdate-locale-nl_NL-1.6.1-0BX02.el6.noarch
Mar 02 08:25:36 Updated: base-wizard-glue-2.0.0-0BX20.el6.noarch
Mar 02 08:25:37 Updated: base-alpine-locale-ja_JP-1.2-1BX57.el6.noarch
Mar 02 08:25:37 Updated: base-apache-locale-de_DE-2.0.0-0BX19.el6.noarch
Mar 02 08:25:37 Updated: base-alpine-locale-fr_FR-1.2-1BX57.el6.noarch
Mar 02 08:25:38 Updated: base-wizard-locale-da_DK-2.0.0-0BX20.el6.noarch
Mar 02 08:25:38 Updated: base-ssl-locale-da_DK-1.3.0-0BX15.el6.noarch
Mar 02 08:25:39 Updated: base-user-locale-ja_JP-2.0.0-0BX15.el6.noarch
Mar 02 08:25:39 Updated: base-vsite-locale-nl_NL-4.0-0BX36.el6.noarch
Mar 02 08:25:39 Updated: base-wizard-locale-pt_PT-2.0.0-0BX20.el6.noarch
Mar 02 08:25:40 Updated: base-ssl-locale-nl_NL-1.3.0-0BX15.el6.noarch
Mar 02 08:25:40 Updated: base-disk-locale-fr_FR-3.0.0-1BX13.el6.noarch
Mar 02 08:25:41 Updated: base-disk-capstone-3.0.0-1BX13.el6.noarch
Mar 02 08:25:42 Updated: base-ssl-capstone-1.3.0-0BX15.el6.noarch
Mar 02 08:25:44 Updated: base-wizard-capstone-2.0.0-0BX20.el6.noarch
Mar 02 08:25:45 Updated: base-vsite-capstone-4.0-0BX36.el6.noarch
Mar 02 08:25:46 Updated: base-user-capstone-2.0.0-0BX15.el6.noarch
Mar 02 08:25:46 Updated: base-alpine-capstone-1.2-1BX57.el6.noarch
Mar 02 08:25:47 Updated: base-apache-capstone-2.0.0-0BX19.el6.noarch
Mar 02 08:25:47 Updated: base-swupdate-capstone-1.6.1-0BX02.el6.noarch
Mar 02 08:25:48 Updated: base-sitestats-capstone-2.0-0BX13.el6.noarch
Mar 02 08:25:49 Updated: glibc-devel-2.12-1.166.el6_7.7.x86_64
Mar 02 08:25:52 Updated: 1:libreoffice-writer-4.2.8.2-11.el6_7.1.x86_64
Mar 02 08:25:52 Updated: 1:libreoffice-headless-4.2.8.2-11.el6_7.1.x86_64
Mar 02 08:25:56 Updated: 
1:java-1.6.0-openjdk-devel-1.6.0.38-1.13.10.0.el6_7.x86_64
Mar 02 08:25:56 Updated: base-am-capstone-2.0.0-0BX08.el6.noarch
Mar 02 08:25:57 Updated: nss-tools-3.19.1-8.el6_7.x86_64
Mar 02 08:25:58 Updated: ntp-4.2.6p5-5.el6_7.4.x86_64
Mar 02 08:25:59 Updated: 32:bind-chroot-9.8.2-0.37.rc1.el6_7.6.x86_64
Mar 02 08:25:59 Updated: 32:bind-utils-9.8.2-0.37.rc1.el6_7.6.x86_64
Mar 02 08:26:01 Updated: openssl-devel-1.0.1e-42.el6_7.4.x86_64
Mar 02 08:26:03 Updated: libxml2-devel-2.7.6-20.el6_7.1.x86_64
Mar 02 08:26:04 Updated: gnutls-2.8.5-19.el6_7.x86_64
Mar 02 08:26:45 Updated: selinux-policy-targeted-3.7.19-279.el6_7.8.noarch
Mar 02 08:26:46 Updated: swatch-4.0.0-0BX28.el6.noarch
Mar 02 08:26:50 Updated: kernel-firmware-2.6.32-573.12.1.el6.noarch
Mar 02 08:26:51 Updated: base-sitestats-scripts-1.0-26BX33.el6.noarch
Mar 02 08:26:52 Updated: jakarta-commons-collections-3.2.1-3.5.el6_7.noarch
Mar 02 08:26:52 Updated: 
jakarta-commons-collections-tomcat5-3.2.1-3.5.el6_7.noarch

Regards

Simone Capra
_______________________________________________________
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